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Yi Xiong

Research Professor

  • Tel: +86-021-34204573
  • Email: xiongyi@sjtu.edu.cn
  • Address: RM 416, Ye Jie-Quan Building
  • Lab Web: http://xbioinfo.sjtu.edu.cn

Education and Research Experience

  • Dec 2018 –                   Department of Bioinformatics and Biostatistics, Shanghai Jiao Tong University, China     Associate Professor (Research)                                                               
  • Jan 2014 –Dec 2018     Department of Bioinformatics and Biostatistics, Shanghai Jiao Tong University, China     Assistant Professor (Research)                                                                       
  • Jan 2012 –Dec 2013     Department of Biological Sciences, Purdue University, West Lafayette, IN, US                  Postdoctoral Research Associate                                                   

Selected Publications

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    Yanyi Chu, Xiaoqi Shan, Tianhang Chen, Mingming Jiang, Yanjing Wang, Qiankun Wang, Dennis Russell Salahub, Yi Xiong*, Dong-Qing Wei*. (2020) DTI-MLCD: predicting drug-target interactions using multilabel learning with community detection method. Brief. Bioinform.  doi:10.1093/bib/bbaa205 (2019 IF: 8.990)

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    Wei Wang, QiuYing Dai, Fang Li, Yi Xiong*, Dong-Qing Wei*. (2020) MLCDForest: multi-label classification with deep forest in disease prediction for long non-coding RNAs. Brief. Bioinform.  doi:10.1093/bib/bbaa104 (2019 IF: 8.990)

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    Yanyi Chu, Aman Chandra Kaushik, Xiangeng Wang, Wei Wang, Yufang Zhang, Xiaoqi Shan, Dennis Russell Salahub, Yi Xiong*, Dong-Qing Wei*. (2019) DTI-CDF: a Cascade Deep Forest Model Towards The Prediction of Drug-Target Interactions Based on Hybrid Features. Brief. Bioinform.  doi:10.1093/bib/bbz152 (2019 IF: 8.990)

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    Xiaoqi Shan, Xiangeng Wang, Cheng-Dong Li, Yanyi Chu, Yufang Zhang, Yi Xiong*, Dong-Qing Wei*. (2019) Prediction of CYP450 Enzyme-Substrate Selectivity Based on the Network-Based Label Space Division Method. J. Chem. Inf. Model.  59:4577-4586 (2019 IF: 4.549)

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    Ting Fang, Zizheng Zhang, Rui Sun, Lin Zhu, Jingjing He, Bei Huang*, Yi Xiong*, Xiaolei Zhu*. (2019) RNAm5CPred: Prediction of RNA 5-methylcytosine Sites Based on Three Different Kinds of Nucleotide Composition. Mol. Ther.-Nucl. Acids 18:739-747. (2019 IF: 7.032)

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    Ronghui You, Shuwei Yao, Yi Xiong, Xiaodi Huang, Fengzhu Sun, Hiroshi Mamitsuka, Shanfeng Zhu*. (2019) NetGO: Improving Large-scale Protein Function Prediction with Massive Network Information. Nucleic Acids Res.  47:W379–W387(2019 IF: 11.501)

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    Yi Xiong, Qiankun Wang, Junchen Yang, Xiaolei Zhu*, Dong-Qing Wei*. (2018) PredT4SE-Stack: Prediction of Bacterial Type IV Secreted Effectors from Protein Sequences using a Stacked Ensemble Method. Front. Microbiol.  9: 2571. (2018 IF: 4.259)

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    Ling LiuYi Xiong, Hongyun Gao, Dong-Qing Wei, Julie C Mitchell*, Xiaolei Zhu*. (2018) dbAMEPNI: a Database of Alanine Mutagenic Effects for Protein-Nucleic Acid Interactions. Database  (2018 IF: 3.683) (Co-first authors)

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    Xiaolei Zhu, Yi Xiong, Daisuke Kihara*. (2015) Large-Scale Binding Ligand Prediction by Improved Patch-based Method Patch-Surfer2.0. Bioinformatics 31(5):707-713. (2015 IF: 5.766)

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    Uma K. Aryal, Yi Xiong, Zachary McBride, Daisuke Kihara, Jun Xie, Mark C. Hall, Daniel B. Szymanski*. (2014) A Proteomic Strategy for Global Analysis of Plant Protein Complexes. Plant Cell 26:3867-3882. (2014 IF: 9.338)